In the vein of mmullis' suggestion, I've successfully used Emacs batch mode to reformat huge Runa code bases. I blogged about it here: http://www.lispplusplus.com/2013/10/mass-clojure-file-format...

Did you consider using Emacs batch mode for re-indenting the source in bulk?

curious as to why you guys left Midje (I use clojure.test as well). What plugins/infrastructure were you missing?